import numpy as np a = np.load("/home/ruomu/Desktop/test.npz") b = a['value'] lon = a['lon'] lat = a['lat'] a = np.load("/home/ruomu/Desktop/test2.npz")['value'] np.savez("/home/ruomu/Desktop/test2.npz", value=np.max(b,axis=0), lon=lon, lat=lat)